A new Middle Path Approach for alignments in BLAST

Garg, Deepak and Saxena, S.C. and Bhardwaj, L.M. (2006) A new Middle Path Approach for alignments in BLAST. Journal of Biological Systems, 14 (4). pp. 567-581. ISSN 0218-3390

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Official URL: http://www.worldscinet.com/jbs/14/1404/S0218339006...


This paper deals with a new middle path approach developed for reducing alignment calculations in BLAST algorithm. This is a new step which is introduced in BLAST algorithm in between the ungapped and gapped alignments. This step of middle path approach between the ungapped and gapped alignments reduces the number of sequences going for gapped alignment. This results in the improvement in speed for alignment up to 30 percent.

Item Type: Article
Uncontrolled Keywords: Gapped Alignment; BLAST; Middle Path; DNA Sequences; HSPs
Subjects: CSIO > Nano Science and Nano Technology
Depositing User: Ms. Jyotsana
Date Deposited: 21 Nov 2016 16:13
Last Modified: 21 Nov 2016 16:13
URI: http://csioir.csio.res.in/id/eprint/50

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